Year
2021
Units
4.5
Contact
3 x 50-minute lectures weekly
4 x 50-minute tutorials per semester
1 x 6-hour practical fortnightly
2 x 3-hour computer labs per semester
2 x 2-hour on-line exercises per semester
Prerequisites
^ = may be enrolled concurrently
1 BIOL2771 - Biochemistry
2 ^ BIOL2772 - Molecular Biology
Must Satisfy: (1 and 2)
Enrolment not permitted
1 of BIOL8005, BIOL9005 has been successfully completed
Topic description

In this topic students will learn the about the functions of cellular proteins and contemporary approaches that are used for the study and characterisation of proteins. Students will build on concepts introduced at second year level. This topic review the process of protein translation, and then examine the post-translational events that affect the structure, function and cellular location of proteins. Traditional techniques for the study of proteins such as protein purification, electrophoresis, western-blotting and enzyme kinetics will be contrast with more contemporary techniques such as mass spectrometry techniques for identification of entire proteomes and computer based approaches for evaluating protein structure and function.

Educational aims

This topic aims to:

  • Provide an understanding of the processes that regulate and control the function of cellular proteins with a particular emphasis on how protein structure relates to function
  • Familiarize students with both experimental and bioinformatic techniques that are used to identify and characterise both individual proteins and entire proteomes
  • Further develop students' scientific skills for work in a molecular biology laboratory
  • Further develop students' generic skills in the areas of accurate record keeping (attention to detail), creativity and problem-solving, independence and teamwork, good written and oral communication, critical thinking
Expected learning outcomes
On completion of this topic you will be expected to be able to:

  1. Explain principles involved in trafficking proteins to different cellular locations
  2. Understand the many different types of post-translational modifications and their functional implications
  3. Explain how and why proteins form complex signal transduction pathways
  4. Explain how protein structures are experimentally determined and analysed
  5. Design a protein purification protocol
  6. Calculate kinetic parameters such as Km, Ki and turnover number
  7. Use tools for characterisation of a protein such as poly-acrylamide gel electrophoresis, western blotting, estimation of protein concentration and enzyme activity assays
  8. Explain the fundamentals of proteome analysis of tissues or cells, and how this technique can play a role in the investigation of the molecular basis of disease
  9. Demonstrate use of bioinformatic tools used in the analysis and prediction of protein sequences structures and interactions
  10. Maintain a laboratory notebook
  11. Prepare solutions and use laboratory equipment
  12. Design and execute a protein purification protocol
  13. Develop a laboratory protocol from an article published in a scientific journal
  14. Present data in tables and graphs in the format used in articles published in scientific journals
  15. Presenting data in tables and graphs
  16. Use Microsoft Office Excel to perform calculations and prepare graphs
  17. Work independently and also in a team
  18. Solve problems by applying existing knowledge to new situations
  19. Communicate in writing
  20. Read and interpret scientific literature

Key dates and timetable

(1), (2)

Each class is numbered in brackets.
Where more than one class is offered, students normally attend only one.

Classes are held weekly unless otherwise indicated.

FULL

If you are enrolled for this topic, but all classes for one of the activities (eg tutorials) are full,
contact your College Office for assistance. Full classes frequently occur near the start of semester.

Students may still enrol in topics with full classes as more places will be made available as needed.

If this padlock appears next to an activity name (eg Lecture), then class registration is closed for this activity.

Class registration normally closes at the end of week 2 of each semester.

Classes in a stream are grouped so that the same students attend all classes in that stream.
Registration in the stream will result in registration in all classes.
  Unless otherwise advised, classes are not held during semester breaks or on public holidays.